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Considerations in the development of SNP detection kits and the case study of Qihengxing CDMO

Detailed introduction to the considerations for developing SNP detection kits
Nov 1st,2024 884 Views
1. SNP Detection Method

Conventional SNP detection methods include array-based hybridization, qPCR, and sequencing. qPCR A large number of SNP detection kits based on the method have been launched on the market due to their advantages of rapidity and simplicity. CYP2C9 and VKORC1 gene detection kit, human SLCO1B1 and ApoE genotyping detection kit, human ADRB1 (1165G>C) gene polymorphism detection kit, etc.

2. The birth of a SNP detection kit

1. Demand research;

2. Design and optimize the reaction system;

①Screen and preliminarily determine the target site, and design primers and probes;

②Screen suitable raw materials, such as enzyme/mix, primers, probes, etc.;

③Continuously optimize primers and probes;

3. Validation of the test kit;

4. Production process development;

5. Clinical trials and registration applications;

6. Production and marketing.

three, The "pain points" of R&D/production companies

1. R&D team building

R&D departments are expensive to operate and often account for a significant proportion of a company's total expenditures.

2. R&D project design

1. Screen and detect target sites and design primers and probes.

2. Screen suitable raw material suppliers in the market.

3. Continue to optimize primers and probes.

Most R&D personnel are good at product design and optimization, but may not be professional enough in raw material formulation; and most raw material suppliers usually only focus on raw material performance and find it difficult to fully consider the overall design of the test kit.

(III) Project development process

Biological experiments are full of uncertainty, and unlike the measurability of physical experiments, they are more like opening a blind box. R&D projects may be delayed for various reasons, and once started, it is difficult to pause or turn back.

(IV) Transformation of R&D projects into production

If the R&D formula is not compatible, it may make it difficult to smoothly transfer the product to production, thus delaying the time to market.

(V) Product production

Every link in the production process is crucial, and any negligence may lead to the failure of the entire production chain.

Four, Qihengxing CDMO Case

Qihengxing's R&D team not only has the R&D and production capabilities for upstream raw materials, but can also design and optimize primer probes based on the characteristics of self-produced raw materials. Take a multi-SNP site detection kit developed by Qihengxing on behalf of a customer as an example:

1. Project Background

The kit is to comprehensively assess the risk of a disease and guide medication by "detecting SNP typing at multiple sites" (probe method qPCR) of hospitalized patients. Party A outsourced product development from a cost perspective. Before Qihengxing took over the project, a reagent raw material supplier provided Party A with a solution, and the product frequently had quality complaints from the client.

(two) Qihengxing delivery results

After receiving the project commission from the customer, the Qihengxing R&D team re-evaluated the technical route, straightened out the R&D ideas and formulated a development plan. After rigorous demonstration and experimental optimization verification, it finally helped the customer achieve a significant improvement in technical parameters:

  1. The gray value of the detection is changed from the original About 10% Down to Below 2% ;
  2. The amplified fluorescence increment is "1-2" Upgrade to "2.5-4.5" ;
  3. The heterozygous Ct value difference is 2.0 Reduced to 0.5 or less ;
  4. The typing results are clearer and the interpretation is more accurate.

Based on Qihengxing's efforts in the probe design and process optimization of this test kit, as well as the stable supply of molecular diagnostic enzymes produced industrially under the ISO13485/ISO9001 quality system, the product has been stable and has been unanimously recognized by end users in the more than two years since the customer's product was launched on the market.

(three) Partial data sharing

Figure 1. Amplification curves of wild-type, mutant, and heterozygous samples of the locus in the customer's original kit system

Figure 2. Amplification curves of wild-type, mutant, and heterozygous samples of the locus under the Qihengxing optimized delivery kit system

Note: The development process and problems encountered in the SNP detection kit described in this article are universal to the development of detection kits based on PCR and qPCR methods. The SNP detection kit is used as an example in this article.

5. Product List

VI. Project Development Requirements Registration Form

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